Don't miss our bi-monthly newsletter, which contains the latest RCC updates.
Upgraded Software
Our Applications Team has been busy upgrading, recompiling, and testing software on our systems. We are pleased to provide upgraded versions of 126 packages.
In addition, we are upgrading the High Performance Computing cluster to RedHat Version 7.1, which includes a new Linux kernel and many other enhancements
Here are the packages, in alphabetical order:
| Package | New Version |
|---|---|
| abyss | 1.5.2 |
| arpack | 3.1.5 |
| autoconf | 2.69 |
| autodocksuite | 4.2.6 |
| bbftp-client | 3.2.1 |
| best | 2.3.1 |
| bigdft | 1.7.6 |
| blat | 35 |
| boost | 1.57.0 |
| bowtie2 | 2.2.5 |
| bowtie | 1.0.1 |
| bwa | 0.7.12 |
| cairo | 1.14.2 |
| cdo | 1.6.9 |
| cmake | 3.2.2 |
| crossbow | 1.2.1 |
| crystal14 | 1.0.3 |
| cufflinks | 2.2.1 |
| daq | 2.0.5 |
| dealII | 8.2.1 |
| eigen | 3.2.4 |
| elph | 1.0.1 |
| fasta | 36.3.7a |
| fastqc | 0.11.3 |
| ffmpeg | 2.6.3 |
| fftw2 | 2.1.5 |
| fftw | 3.3.4 |
| freefem++ | 3.31 |
| ga | 5.3b |
| gerris | 1.3.2 |
| git | 2.4.2 |
| glimmer | 3.02b |
| gmm | 4.3 |
| grads | 2.0.2 |
| grib_api | 1.13.1 |
| gtk-doc | 1.23 |
| gtkglextmm | 1.2.0 |
| gtkglext | 1.2.0 |
| gts | 0.7.6 |
| hdf5 | 1.8.12 |
| hdf | 4.2.10 |
| hdfview | 2.11.0 |
| hmmer | 3.1b1 |
| hwloc | 1.10.1 |
| hypre | 2.8.0b |
| ipython | 3.1.0 |
| jags | 3.4.0 |
| jhdf5 | 2.11.0 |
| kmeans | 1 |
| lammps | 20150316 |
| lapack | 3.5 |
| last | 581 |
| libbitmask | 2.0 |
| libffi | 3.1 |
| libibumad | 1.3.9 |
| libibverbs | 1.1.8 |
| libocrdma | 1.0.5 |
| libpfm | 4.6.0 |
| librdmacm | 1.0.18.1 |
| libsx | 2.05 |
| mafft | 7.149 |
| mauve | 2.4.0 |
| mct | 2.8.3 |
| mira | 4.0.2 |
| mpiblast | 1.6.0 |
| mpifasta-3.4 | 3.4 |
| mpihmmer-0.92 | 0.92 |
| mpimrbayes | 3.1.2 |
| mrbayes | 3.2.1. 3.1.2 |
| mummer | 3.23 |
| mvapich2 | 2.1 |
| namd | 2.10 |
| nasm | 2.11.08 |
| ncl | 6.3.0 |
| nco | 4.4.9 |
| ncview | 2.1.5 |
| netcdf-c | 4.3.3.1 |
| netcdf-cxx | 4.2 |
| netcdf-fortran | 4.4.2 |
| netcdf | 4.3.3.1 |
| newtonx | 1.4.0.2 |
| numpy | 1.9.2 |
| nwchem | 6.5 |
| octave | 4.0.0 |
| openblas | 0.2.14 |
| opencv | 3.0.0 |
| openmpi-1.8.6 | 1.8.6 |
| papi | 5.4.1 |
| parmetis | 4.0.3 |
| pdt | 3.20 |
| pnetcdf | 1.6.0 |
| povray | 3.7.0 |
| psutil | 2.2.1 |
| pygtkglext | 1.1.0 |
| pyhdf | 0.8.3 |
| pymol | 1.7.4 |
| python3 | 3.4.3 |
| python-biopython | 1.65 |
| python-pip | 7.0.3 |
| python-setuptools | 17.1 |
| R | 3.2.0, 3.1.3 |
| samtools | 0.1.19 |
| scalapack | 2.0.2 |
| scipy | 0.14.1 |
| slurm | 14.11.7 |
| snort | 2.9.7.3 |
| source-highlight | 3.1.7 |
| sra_sdk | 2.3.5 |
| star | 2.4.1d |
| suitesparse | 4.3.1 |
| superlu_dist | 4.0 |
| SuperLU | 4.3 |
| svgalib | 1.9.25 |
| szip | 2.1 |
| tophat | 2.0.14 |
| trans-ABySS | 1.5.3 |
| trimmomatic | 0.33 |
| udunits2 | 2.2.19 |
| vmd | 1.9.1 |
| wgrib2 | 2.0.1 |
| wgrib | 1.8.1.0b |
| wise2 | 2.2.0 |
| wombat | 1 |
| xmgrace | 5.1.25 |
| yasm | 1.3.0 |
| zeromq | 4.0.5 |