A Python Package for Analysis of High-Throughput Genetic Sequence Data


HTSeq is a python package designed to take in sequence data from high-throughput genetic sequencing technologies and then process this data for further analysis. The package can handle reading and writing of sequence data, analysis of read quality and much more. The full documentation can be found at the main page for the package.

Using HTSeq on RCC Resources

HTSeq is available only on Spear nodes. No module needs to be loaded before this package can be used witin python codes. In order to use the HTSeq package, all you need to do is import the package to your code using import HTSeq. This should provide access to the package. For further information and detailed usage documentation, please refer to the main documentation for the package.